{
  "_id": "6a11738bacfb0bcc41cf842d",
  "Package": "kyotil",
  "LazyLoad": "yes",
  "LazyData": "yes",
  "Version": "2025.12-12",
  "Title": "Utility Functions for Statistical Analysis Report Generation and\nMonte Carlo Studies",
  "Authors@R": "c(person(\"Youyi\", \"Fong\", role = \"cre\", email = \"youyifong@gmail.com\"), person(\"Krisztian\", \"Sebestyen\", role = \"aut\", email = \"ksebestyen@gmail.com\"), person(\"Han\", \"Sunwoo\", role = \"aut\", email = \"sunwooya@gmail.com\"), person(\"Jason\", \"Becker\", role = \"ctb\"), person(\"Bendix\", \"Carstensen\", role = \"ctb\", email=\"bxc@steno.dk\"), person(\"Daryl\", \"Morris\", role = \"ctb\", email=\"demorris@fhcrc.org\"), person(\"Josh\", \"Pasek\", role = \"ctb\"), person(\"Dennis\", \"Chao\", email=\"dennisc@intven.com\", role = \"ctb\"), person(\"Andri\", \"Signorell\", email=\"andri@signorell.net\", role = \"ctb\"), person(\"Sue\", \"Li\", email=\"sli@fredhutch.org\", role = \"ctb\"), person(\"Jonathan\", \"Bartlett\", email=\"J.W.Bartlett@bath.ac.uk\", role = \"ctb\"), person(\"Christophe\", \"Dutang\", email=\"dutang@ceremade.dauphine.fr\", role = \"ctb\") )",
  "Description": "Helper functions for creating formatted summary of\nregression models, writing publication-ready tables to latex\nfiles, and running Monte Carlo experiments.",
  "VignetteBuilder": "R.rsp",
  "License": "GPL (>= 2)",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-23 09:25:57 UTC",
    "User": "root"
  },
  "Author": "Youyi Fong [cre], Krisztian Sebestyen [aut], Han Sunwoo [aut],\nJason Becker [ctb], Bendix Carstensen [ctb], Daryl Morris\n[ctb], Josh Pasek [ctb], Dennis Chao [ctb], Andri Signorell\n[ctb], Sue Li [ctb], Jonathan Bartlett [ctb], Christophe Dutang\n[ctb]",
  "Maintainer": "Youyi Fong <youyifong@gmail.com>",
  "Repository": "https://youyifong.r-universe.dev",
  "Date/Publication": "2026-03-24 20:39:47 UTC",
  "RemoteUrl": "https://github.com/youyifong/kyotil",
  "RemoteRef": "HEAD",
  "RemoteSha": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
  "MD5sum": "887e004e8f7780715c08d83f9dbcd960",
  "_user": "youyifong",
  "_type": "src",
  "_file": "kyotil_2025.12-12.tar.gz",
  "_fileid": "18155cf864e9c6fa3b27114144cb0098d4f0121f60db03d713fe6a3dfff5c214",
  "_filesize": 434430,
  "_sha256": "18155cf864e9c6fa3b27114144cb0098d4f0121f60db03d713fe6a3dfff5c214",
  "_created": "2026-05-23T09:25:57.000Z",
  "_published": "2026-05-23T09:29:47.144Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77512260798,
      "time": 151,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7175952666"
    },
    {
      "job": 77512260796,
      "time": 161,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7175953421"
    },
    {
      "job": 77512260797,
      "time": 142,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7175951910"
    },
    {
      "job": 77512260801,
      "time": 152,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7175952800"
    },
    {
      "job": 77512260802,
      "time": 96,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7175948478"
    },
    {
      "job": 77512260803,
      "time": 192,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7175955805"
    },
    {
      "job": 77512260785,
      "time": 87,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7175947808"
    },
    {
      "job": 77512260799,
      "time": 171,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7175954280"
    },
    {
      "job": 77512119828,
      "time": 184,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175940622"
    },
    {
      "job": 77512260769,
      "time": 149,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175952351"
    },
    {
      "job": 77512260780,
      "time": 132,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7175951195"
    },
    {
      "job": 77512260781,
      "time": 103,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7175948968"
    },
    {
      "job": 77512260783,
      "time": 115,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7175949793"
    }
  ],
  "_buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/youyifong/kyotil",
  "_commit": {
    "id": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
    "author": "youyifong <youyifong@gmail.com>",
    "committer": "youyifong <youyifong@gmail.com>",
    "message": "updates\n",
    "time": 1774384787
  },
  "_maintainer": {
    "name": "Youyi Fong",
    "email": "youyifong@gmail.com",
    "login": "youyifong",
    "description": "",
    "uuid": 29523631
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "R.rsp",
      "role": "Suggests"
    },
    {
      "package": "lme4",
      "role": "Suggests"
    },
    {
      "package": "nlme",
      "role": "Suggests"
    },
    {
      "package": "xtable",
      "role": "Suggests"
    },
    {
      "package": "MASS",
      "role": "Suggests"
    },
    {
      "package": "splines",
      "role": "Suggests"
    },
    {
      "package": "survival",
      "role": "Suggests"
    },
    {
      "package": "abind",
      "role": "Suggests"
    },
    {
      "package": "pracma",
      "role": "Suggests"
    },
    {
      "package": "VGAM",
      "role": "Suggests"
    },
    {
      "package": "copula",
      "role": "Suggests"
    },
    {
      "package": "mvtnorm",
      "role": "Suggests"
    },
    {
      "package": "Hmisc",
      "role": "Suggests"
    },
    {
      "package": "RColorBrewer",
      "role": "Suggests"
    },
    {
      "package": "zoo",
      "role": "Suggests"
    },
    {
      "package": "doParallel",
      "role": "Suggests"
    },
    {
      "package": "Exact",
      "role": "Suggests"
    },
    {
      "package": "survey",
      "role": "Suggests"
    },
    {
      "package": "magick",
      "role": "Suggests"
    },
    {
      "package": "WeightedROC",
      "role": "Suggests"
    },
    {
      "package": "saws",
      "role": "Suggests"
    },
    {
      "package": "pROC",
      "role": "Suggests"
    },
    {
      "package": "PRROC",
      "role": "Suggests"
    },
    {
      "package": "officer",
      "role": "Suggests"
    }
  ],
  "_owner": "youyifong",
  "_selfowned": true,
  "_usedby": 9,
  "_updates": [
    {
      "week": "2025-21",
      "n": 1
    },
    {
      "week": "2025-22",
      "n": 1
    },
    {
      "week": "2025-23",
      "n": 4
    },
    {
      "week": "2025-25",
      "n": 1
    },
    {
      "week": "2025-31",
      "n": 2
    },
    {
      "week": "2025-35",
      "n": 3
    },
    {
      "week": "2025-36",
      "n": 2
    },
    {
      "week": "2025-37",
      "n": 1
    },
    {
      "week": "2025-46",
      "n": 3
    },
    {
      "week": "2025-50",
      "n": 4
    },
    {
      "week": "2025-51",
      "n": 1
    },
    {
      "week": "2026-04",
      "n": 2
    },
    {
      "week": "2026-07",
      "n": 2
    },
    {
      "week": "2026-08",
      "n": 1
    },
    {
      "week": "2026-10",
      "n": 2
    },
    {
      "week": "2026-11",
      "n": 1
    },
    {
      "week": "2026-12",
      "n": 1
    },
    {
      "week": "2026-13",
      "n": 3
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "youyifong",
      "count": 174,
      "uuid": 29523631
    },
    {
      "user": "shan-stat",
      "count": 5,
      "uuid": 64387506
    }
  ],
  "_userbio": {
    "uuid": 29523631,
    "type": "user",
    "name": "Youyi Fong"
  },
  "_downloads": {
    "count": 1284,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/kyotil"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/youyifong/kyotil",
  "_searchresults": 227,
  "_topics": [
    "openblas"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/kyotil.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/youyifong/kyotil",
  "_realowner": "youyifong",
  "_cranurl": true,
  "_releases": [
    {
      "version": "2013.12-9",
      "date": "2013-12-09"
    },
    {
      "version": "2014.4-1",
      "date": "2014-04-01"
    },
    {
      "version": "2014.10-5",
      "date": "2014-10-01"
    },
    {
      "version": "2015.2-27",
      "date": "2015-03-04"
    },
    {
      "version": "2015.5-20",
      "date": "2015-05-20"
    },
    {
      "version": "2015.11-13",
      "date": "2015-11-14"
    },
    {
      "version": "2016.7-7",
      "date": "2016-07-08"
    },
    {
      "version": "2016.7-9",
      "date": "2016-07-11"
    },
    {
      "version": "2016.7-27",
      "date": "2016-07-27"
    },
    {
      "version": "2016.11-9",
      "date": "2016-11-10"
    },
    {
      "version": "2017.6-1",
      "date": "2017-06-01"
    },
    {
      "version": "2017.10-31",
      "date": "2017-11-03"
    },
    {
      "version": "2017.12-27",
      "date": "2018-01-03"
    },
    {
      "version": "2018.7-16",
      "date": "2018-08-07"
    },
    {
      "version": "2018.10-17",
      "date": "2018-10-23"
    },
    {
      "version": "2019.11-22",
      "date": "2019-11-25"
    },
    {
      "version": "2020.8-22",
      "date": "2020-08-26"
    },
    {
      "version": "2020.10-12",
      "date": "2020-10-13"
    },
    {
      "version": "2021.5-14",
      "date": "2021-05-14"
    },
    {
      "version": "2022.4-5",
      "date": "2022-04-06"
    },
    {
      "version": "2022.9-17",
      "date": "2022-10-07"
    },
    {
      "version": "2022.12-20",
      "date": "2022-12-21"
    },
    {
      "version": "2023.2-2",
      "date": "2023-02-02"
    },
    {
      "version": "2023.11-27",
      "date": "2023-11-28"
    },
    {
      "version": "2024.1-30",
      "date": "2024-01-29"
    },
    {
      "version": "2024.5-8",
      "date": "2024-05-06"
    },
    {
      "version": "2024.7-31",
      "date": "2024-08-01"
    },
    {
      "version": "2024.11-01",
      "date": "2024-11-03"
    }
  ],
  "_exports": [
    ".as.double",
    "%.%",
    "abline.pt.slope",
    "abline.pts",
    "abline.shade",
    "abline.shade.2",
    "add.mtext.label",
    "add.mtext.label.2",
    "addRoc",
    "age_calc",
    "AR1",
    "as.binary",
    "binary",
    "binary2",
    "binaryloess",
    "binom.coef",
    "butterfly.plot",
    "cbinduneven",
    "classification.error",
    "coef.auc",
    "coef.geese",
    "coef.tps",
    "computeRoc",
    "concatList",
    "contain",
    "cor.mixed",
    "cor.mixed.default",
    "cor.mixed.formula",
    "cor.mixed.vector",
    "corplot",
    "corplot.default",
    "corplot.formula",
    "cox.zph.2",
    "dbern",
    "dcorbern",
    "ddoublexp",
    "dec_to_binary",
    "Deming",
    "DMHeatMap",
    "dmixnorm",
    "dnorm.norm.gamma",
    "DXD",
    "empty.plot",
    "empty2na",
    "escape",
    "escape_latex",
    "escapeUnderline",
    "EXCH",
    "expit",
    "f2c",
    "fastauc",
    "fileStem",
    "fill.jagged.array",
    "firstIndex",
    "formatDouble",
    "formatInt",
    "formatPvalues",
    "ftoi",
    "get_count_from_xy_coor",
    "get.kfold.splits",
    "get.sim.res",
    "get.splits",
    "getExt",
    "getFileStem",
    "getFixedEf",
    "getFixedEf.coxph",
    "getFixedEf.gam",
    "getFixedEf.gee",
    "getFixedEf.geese",
    "getFixedEf.glm",
    "getFixedEf.glmerMod",
    "getFixedEf.inla",
    "getFixedEf.lm",
    "getFixedEf.lme",
    "getFixedEf.logistf",
    "getFixedEf.matrix",
    "getFixedEf.mer",
    "getFixedEf.merMod",
    "getFixedEf.MIresult",
    "getFixedEf.svy_vglm",
    "getFixedEf.svycoxph",
    "getFixedEf.svyglm",
    "getFixedEf.tps",
    "getFormattedMCSummary",
    "getFormattedSummary",
    "getK",
    "getMfrow",
    "getMidPoints",
    "getStem",
    "getUpperRight",
    "getVarComponent",
    "getVarComponent.glmerMod",
    "getVarComponent.hyperpar.inla",
    "getVarComponent.matrix",
    "getVarComponent.mer",
    "getVarComponent.merMod",
    "H",
    "hosmerlem",
    "info.cor",
    "INT",
    "interaction.table",
    "interpolate",
    "iorw",
    "keepWarnings",
    "kfold.split",
    "l.measure",
    "last",
    "lastIndex",
    "len",
    "logDiffExp",
    "logit",
    "logMeanExp",
    "logSumExp",
    "logSumExpFor2",
    "lpo.split",
    "make.latex.coef.table",
    "make.timedep.dataset",
    "MCsummary",
    "meanmed",
    "metrics_from_preds",
    "mix",
    "multi.outer",
    "mutual.info",
    "my.interaction.plot",
    "myaggregate",
    "myboxplot",
    "myboxplot.data.frame",
    "myboxplot.formula",
    "myboxplot.list",
    "mycor",
    "mycor.test",
    "mydev.off",
    "myfigure",
    "myfisher.test",
    "myforestplot",
    "myhist",
    "mykable",
    "mylast",
    "mylegend",
    "mylines",
    "mymatplot",
    "mypairs",
    "mypdf",
    "myplot",
    "myplot.cox.zph",
    "myplot.loess",
    "mypng",
    "mypostscript",
    "myprint",
    "myprint.default",
    "myprint.matrix",
    "myreshapelong",
    "myreshapewide",
    "mysanitize.numbers",
    "mysanitize.text",
    "mysapply",
    "myscale",
    "mysystem",
    "mytable",
    "mytapply",
    "mytex",
    "mytex.begin",
    "mytex.end",
    "mytiff",
    "mywrite",
    "mywrite.csv",
    "p.adj.perm",
    "panel.cor.pearson",
    "panel.cor.spearman",
    "panel.hist",
    "panel.nothing",
    "pava",
    "pdoublexp",
    "permn",
    "plotRoc",
    "predict.auc",
    "predict.geese",
    "predict.pcc",
    "predict.tps",
    "prettyprint",
    "print.auc",
    "print.iorw",
    "qdoublexp",
    "quick.t.test",
    "quiet_library",
    "ran.kfold.split",
    "rank.inv.norm",
    "ratio",
    "ratio.auc",
    "ratio.glm",
    "rbern",
    "rbidoublexp",
    "rbigamma",
    "rbilogistic",
    "rdoublexp",
    "read.sv",
    "read.tsv",
    "reduce_margin",
    "reduce_whitespace",
    "rejective.sampling",
    "remove.prefix",
    "rep.data.frame",
    "rep.matrix",
    "rep.matrix.block",
    "residuals.geese",
    "risk.cal",
    "rmixnorm",
    "rnorm.ar",
    "rnorm.norm.gamma",
    "roundup",
    "sample.for.cv",
    "scaled.hist",
    "shift.left",
    "shift.right",
    "shrink_margin",
    "shrink_whitespace",
    "signtest",
    "sim.dat.tvarying.three",
    "sim.dat.tvarying.two",
    "skew",
    "smoothed.scaled.hist",
    "ssase",
    "Stirling2",
    "summ",
    "summary.auc",
    "symprod",
    "table.cases",
    "table.cases.3",
    "table.prop",
    "thin.rows",
    "ThinRows",
    "tr",
    "trainauc",
    "trainauc.auc",
    "trainauc.glm",
    "tukey.mtest",
    "tXDX",
    "txSy",
    "unix",
    "vcov.geese",
    "vcov.logistf",
    "vcov.tps",
    "vector.t.test",
    "VEplot",
    "VEplot.cox.zph",
    "VEplot.glm",
    "whiskers",
    "wtd.cor",
    "wtd.hist"
  ],
  "_datasets": [
    {
      "name": "kid",
      "title": "Dataset from Cowling et al.",
      "object": "kid",
      "class": [
        "data.frame"
      ],
      "fields": [
        "hhID",
        "age",
        "intervention",
        "vaccine",
        "vaccine.date",
        "postvax.date",
        "prevax.B.Brisbane",
        "postvax.B.Brisbane",
        "surv_time",
        "flu"
      ],
      "rows": 736,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "age_calc",
      "title": "Age Calculation",
      "topics": [
        "age_calc"
      ]
    },
    {
      "page": "auc",
      "title": "AUC",
      "topics": [
        "auc",
        "coef.auc",
        "predict.auc",
        "print.auc",
        "ratio",
        "ratio.auc",
        "ratio.glm",
        "summary.auc",
        "trainauc",
        "trainauc.auc",
        "trainauc.glm"
      ]
    },
    {
      "page": "base",
      "title": "Some Base Functions",
      "topics": [
        "binary",
        "binary2",
        "cbinduneven",
        "f2c",
        "ftoi",
        "keepWarnings",
        "meanmed",
        "multi.outer",
        "myaggregate",
        "mycor",
        "myreshapelong",
        "myreshapewide",
        "mysapply",
        "myscale",
        "mysystem",
        "mytable",
        "mytapply",
        "read.sv",
        "read.tsv",
        "table.cases",
        "table.cases.3",
        "table.prop",
        "unix"
      ]
    },
    {
      "page": "binaryloess",
      "title": "Using loess to Check Functional Form for Logistic Regression",
      "topics": [
        "binaryloess"
      ]
    },
    {
      "page": "cox.zph.2",
      "title": "Test the Proportional Hazards Assumption of a Cox Regression (a slightly modified version)",
      "topics": [
        "cox.zph.2"
      ]
    },
    {
      "page": "cross_validation",
      "title": "Cross Validation Functions",
      "topics": [
        "get.kfold.splits",
        "get.splits",
        "kfold.split",
        "lpo.split",
        "ran.kfold.split",
        "sample.for.cv"
      ]
    },
    {
      "page": "Deming",
      "title": "Fit Deming regression.",
      "topics": [
        "coef.Deming",
        "Deming",
        "getFixedEf.Deming",
        "predict.Deming",
        "summary.Deming",
        "vcov.Deming"
      ]
    },
    {
      "page": "DMHeatMap",
      "title": "Better Heatmap Function",
      "topics": [
        "DMHeatMap"
      ]
    },
    {
      "page": "imaging_spatial_analysis",
      "title": "Imaging analysis for spatial region",
      "topics": [
        "get_count_from_xy_coor"
      ]
    },
    {
      "page": "get.sim.res",
      "title": "Read simulation results",
      "topics": [
        "get.sim.res",
        "getFormattedMCSummary",
        "MCsummary"
      ]
    },
    {
      "page": "getK",
      "title": "getK",
      "topics": [
        "getK"
      ]
    },
    {
      "page": "iorw",
      "title": "Causal Mediation Analysis of Cowling et al.",
      "topics": [
        "iorw",
        "print.iorw"
      ]
    },
    {
      "page": "kid",
      "title": "Dataset from Cowling et al.",
      "topics": [
        "kid"
      ]
    },
    {
      "page": "kyotil",
      "title": "kyotil",
      "topics": [
        "kyotil"
      ]
    },
    {
      "page": "make.timedep.dataset",
      "title": "Create Dataset for Time-dependent Covariate Proportional Hazard Model Analaysi",
      "topics": [
        "make.timedep.dataset"
      ]
    },
    {
      "page": "math",
      "title": "Math Functions",
      "topics": [
        "as.binary",
        "binom.coef",
        "expit",
        "interpolate",
        "logDiffExp",
        "logit",
        "logMeanExp",
        "logSumExp",
        "logSumExpFor2",
        "math.functions",
        "permn",
        "Stirling2"
      ]
    },
    {
      "page": "matrix",
      "title": "Matrix and Array Functions",
      "topics": [
        "AR1",
        "array.functions",
        "concatList",
        "EXCH",
        "fill.jagged.array",
        "getMidPoints",
        "getUpperRight",
        "matrix.array.functions",
        "matrix.functions",
        "mix",
        "mylast",
        "rep.data.frame",
        "rep.matrix",
        "rep.matrix.block",
        "shift.left",
        "shift.right",
        "thin.rows",
        "ThinRows",
        "tr"
      ]
    },
    {
      "page": "matrix2",
      "title": "Matrix Functions that May Be Faster than",
      "topics": [
        ".as.double",
        "DXD",
        "symprod",
        "tXDX",
        "txSy"
      ]
    },
    {
      "page": "misc",
      "title": "Misc Functions",
      "topics": [
        "dec_to_binary",
        "empty2na",
        "INT",
        "pava",
        "predict.pcc",
        "rank.inv.norm",
        "summ"
      ]
    },
    {
      "page": "p.adj.perm",
      "title": "Permutation-based Multitesting P Values Adjustment",
      "topics": [
        "p.adj.perm"
      ]
    },
    {
      "page": "plotting",
      "title": "Plotting Functions",
      "topics": [
        "abline.pt.slope",
        "abline.pts",
        "abline.shade",
        "abline.shade.2",
        "add.mtext.label",
        "add.mtext.label.2",
        "butterfly.plot",
        "corplot",
        "corplot.default",
        "corplot.formula",
        "empty.plot",
        "getMfrow",
        "my.interaction.plot",
        "myboxplot",
        "myboxplot.data.frame",
        "myboxplot.formula",
        "myboxplot.list",
        "mydev.off",
        "myfigure",
        "myforestplot",
        "myhist",
        "mylegend",
        "mylines",
        "mymatplot",
        "mypairs",
        "mypdf",
        "myplot",
        "myplot.loess",
        "mypng",
        "mypostscript",
        "mytiff",
        "panel.cor",
        "panel.hist",
        "panel.nothing",
        "reduce_margin",
        "reduce_whitespace",
        "shrink_margin",
        "shrink_whitespace",
        "smoothed.scaled.hist",
        "whiskers",
        "wtd.hist"
      ]
    },
    {
      "page": "print",
      "title": "Print Functions",
      "topics": [
        "formatDouble",
        "formatInt",
        "make.latex.coef.table",
        "myprint",
        "myprint.default",
        "myprint.matrix",
        "mysanitize.numbers",
        "mysanitize.text",
        "mytex",
        "mytex.begin",
        "mytex.end",
        "mywrite",
        "mywrite.csv",
        "prettyprint",
        "roundup"
      ]
    },
    {
      "page": "random",
      "title": "Random Functions",
      "topics": [
        "dbern",
        "dcorbern",
        "ddoublexp",
        "dmixnorm",
        "dnorm.norm.gamma",
        "pdoublexp",
        "qdoublexp",
        "rbern",
        "rbidoublexp",
        "rbigamma",
        "rbilogistic",
        "rdoublexp",
        "rejective.sampling",
        "rmixnorm",
        "rnorm.ar",
        "rnorm.norm.gamma"
      ]
    },
    {
      "page": "regression.model.functions",
      "title": "Regression Model Functions",
      "topics": [
        "coef.geese",
        "coef.tps",
        "getFixedEf",
        "getFixedEf.coxph",
        "getFixedEf.gam",
        "getFixedEf.gee",
        "getFixedEf.geese",
        "getFixedEf.glm",
        "getFixedEf.glmerMod",
        "getFixedEf.inla",
        "getFixedEf.lm",
        "getFixedEf.lme",
        "getFixedEf.lmerMod",
        "getFixedEf.logistf",
        "getFixedEf.matrix",
        "getFixedEf.mer",
        "getFixedEf.merMod",
        "getFixedEf.MIresult",
        "getFixedEf.svycoxph",
        "getFixedEf.svyglm",
        "getFixedEf.svy_vglm",
        "getFixedEf.tps",
        "getFixedEf2",
        "getFormattedSummary",
        "getVarComponent",
        "getVarComponent.glmerMod",
        "getVarComponent.hyperpar.inla",
        "getVarComponent.lmerMod",
        "getVarComponent.matrix",
        "getVarComponent.mer",
        "getVarComponent.merMod",
        "interaction.table",
        "predict.geese",
        "predict.tps",
        "residuals.geese",
        "risk.cal",
        "vcov.geese",
        "vcov.logistf",
        "vcov.tps"
      ]
    },
    {
      "page": "roc",
      "title": "ROC and AUC",
      "topics": [
        "addRoc",
        "classification.error",
        "computeRoc",
        "fastauc",
        "plotRoc"
      ]
    },
    {
      "page": "sim.dat.tvarying",
      "title": "Simulation Functions for Time-dependent Proportional Hazard Model",
      "topics": [
        "sim.dat.tvarying.three",
        "sim.dat.tvarying.two"
      ]
    },
    {
      "page": "stat",
      "title": "Stat Functions",
      "topics": [
        "cor.mixed",
        "cor.mixed.default",
        "cor.mixed.formula",
        "cor.mixed.vector",
        "H",
        "info.cor",
        "kappacor",
        "l.measure",
        "mutual.info",
        "skew",
        "stat.functions",
        "yule.y"
      ]
    },
    {
      "page": "string",
      "title": "String Functions",
      "topics": [
        "%.%",
        "contain",
        "escapeUnderline",
        "fileStem",
        "firstIndex",
        "getExt",
        "getFileStem",
        "getStem",
        "lastIndex",
        "remove.prefix",
        "string.functions",
        "trim"
      ]
    },
    {
      "page": "tests",
      "title": "Testing Functions",
      "topics": [
        "hosmerlem",
        "mycor.test",
        "myfisher.test",
        "quick.t.test",
        "signtest",
        "tukey.mtest",
        "vector.t.test"
      ]
    },
    {
      "page": "VEplot",
      "title": "Vaccine Efficacy Plots",
      "topics": [
        "myplot.cox.zph",
        "VEplot",
        "VEplot.cox.zph",
        "VEplot.glm"
      ]
    }
  ],
  "_readme": "https://github.com/youyifong/kyotil/raw/HEAD/README.md",
  "_rundeps": [],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    }
  ],
  "_vignettes": [
    {
      "source": "kyotil-vignette.pdf.asis",
      "filename": "kyotil-vignette.pdf",
      "title": "Fitting Threshold Regression Models Using chngpt",
      "engine": "R.rsp::asis",
      "headings": [],
      "created": "2021-02-04 19:39:04",
      "modified": "2021-02-04 19:39:04",
      "commits": 1
    }
  ],
  "_score": 7.85019715452427,
  "_indexed": true,
  "_nocasepkg": "kyotil",
  "_universes": [
    "youyifong"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2025.12-12",
      "date": "2026-05-23T09:28:22.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "de3412753ae6871f023308e98773c8ae250b0288faa9a84aa0d2301287f49e49",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2025.12-12",
      "date": "2026-05-23T09:28:28.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "ad3d1e6df0e39ca8e50f322e14ece72f97c351ab331018a381719f1b0da74cf8",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2025.12-12",
      "date": "2026-05-23T09:28:14.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "09e08e035367a91d43658bad1d5d8cc62fd5326d752ad2547c39c9e13ce9a845",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2025.12-12",
      "date": "2026-05-23T09:28:23.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "7abd7c5a1cdca07a7ee43edc016c7501c8ef02c93d20304b8fb811ab34d4cae7",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2025.12-12",
      "date": "2026-05-23T09:27:33.000Z",
      "arch": "aarch64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "10b1bc45b44894e3876dd52f0999a08772d827d0353b042bb880748dc5190a61",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2025.12-12",
      "date": "2026-05-23T09:28:47.000Z",
      "arch": "x86_64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "ac2916d5eee7272167802473b7bac18a459bef92ba0130bd913ea2cbecd3c4a7",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2025.12-12",
      "date": "2026-05-23T09:27:26.000Z",
      "arch": "aarch64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "c26b6397500c885649209b974ef058be0edf1ddc69824c2443d0afb84db74205",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2025.12-12",
      "date": "2026-05-23T09:28:25.000Z",
      "arch": "x86_64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "719e877e877dd8f8d9ed86e75c39f7d73f0055de0d513bf28634ef8b7f164158",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2025.12-12",
      "date": "2026-05-23T09:28:43.000Z",
      "arch": "emscripten",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "4ea43c194c389ed2f6a6429762da85af53d52a5989574b39bef3c8d6c162451c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2025.12-12",
      "date": "2026-05-23T09:27:40.000Z",
      "arch": "x86_64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "bcad8fa7d67b62f06d08595627cfdf4409e9e9bf40663e0958b8793c3d908c86",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2025.12-12",
      "date": "2026-05-23T09:27:15.000Z",
      "arch": "x86_64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "8e5d536790ac25ebba14be4bcea5b6c6fd665a672bf505447a97119af27fb24c",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2025.12-12",
      "date": "2026-05-23T09:27:26.000Z",
      "arch": "x86_64",
      "commit": "18a33802b7a09bd6e5c83dd9e93fd890cb1bd711",
      "fileid": "928506ab52b86a6f2e1525380e3a0c964268fb464112d935ddebbfa217f3886b",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/26329158340"
    }
  ]
}