{
  "_id": "6a1f1af0b401979e7341f300",
  "Package": "copcor",
  "LazyLoad": "yes",
  "Version": "2024.7-31",
  "Title": "Correlates of Protection and Correlates of Risk Functions",
  "Authors@R": "c(person(\"Youyi\", \"Fong\", role = \"cre\", email = \"youyifong@gmail.com\"), person(\"Yiwen\", \"He\", role = \"aut\", email = \"ylu2@scharp.org\"), person(\"Chenchen\", \"Yu\", role = \"aut\", email = \"cyu@scharp.org\"), person(\"Bhavesh\", \"Borate\", role = \"aut\", email = \"bborate@scharp.org\"), person(\"Peter\", \"Gilbert\", role = \"aut\", email = \"pgilbert@fredhutch.org\"))",
  "Description": "Correlates of protection (CoP) and correlates of risk\n(CoR) study the immune biomarkers associated with an infectious\ndisease outcome, e.g. COVID or HIV-1 infection. This package\ncontains shared functions for analyzing CoP and CoR, including\nbootstrapping procedures, competing risk estimation, and\nbootstrapping marginalized risks.",
  "VignetteBuilder": "R.rsp",
  "License": "GPL (>= 2)",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-16 09:27:35 UTC",
    "User": "root"
  },
  "Author": "Youyi Fong [cre], Yiwen He [aut], Chenchen Yu [aut], Bhavesh\nBorate [aut], Peter Gilbert [aut]",
  "Maintainer": "Youyi Fong <youyifong@gmail.com>",
  "Repository": "https://youyifong.r-universe.dev",
  "Date/Publication": "2024-08-01 02:49:50 UTC",
  "RemoteUrl": "https://github.com/cran/copcor",
  "RemoteRef": "HEAD",
  "RemoteSha": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
  "MD5sum": "ea5091f7f252bd4205a74f3700e5e5ba",
  "_user": "youyifong",
  "_type": "src",
  "_file": "copcor_2024.7-31.tar.gz",
  "_fileid": "493b59e213127334c917d0256fc8dec16c7513f696ec4fca563cda3d1349a296",
  "_filesize": 118175,
  "_sha256": "493b59e213127334c917d0256fc8dec16c7513f696ec4fca563cda3d1349a296",
  "_created": "2026-05-16T09:27:35.000Z",
  "_published": "2026-06-02T18:03:28.983Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79138690741,
      "time": 101,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7032312970"
    },
    {
      "job": 79138690722,
      "time": 99,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7032312715"
    },
    {
      "job": 79138690755,
      "time": 98,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7032320959"
    },
    {
      "job": 79138690392,
      "time": 94,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7032320482"
    },
    {
      "job": 79138690046,
      "time": 159,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7032302245"
    },
    {
      "job": 79138690143,
      "time": 86,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7365898630"
    },
    {
      "job": 79138690520,
      "time": 68,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7032309398"
    },
    {
      "job": 79138690738,
      "time": 89,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7032311552"
    },
    {
      "job": 79138690461,
      "time": 75,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7032310250"
    }
  ],
  "_buildurl": "https://github.com/r-universe/youyifong/actions/runs/25958392288",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/copcor",
  "_commit": {
    "id": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
    "author": "Youyi Fong <youyifong@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2024.7-31\n",
    "time": 1722480590
  },
  "_maintainer": {
    "name": "Youyi Fong",
    "email": "youyifong@gmail.com",
    "login": "youyifong",
    "uuid": 29523631
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6",
      "role": "Depends"
    },
    {
      "package": "kyotil",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "R.rsp",
      "role": "Suggests"
    },
    {
      "package": "survival",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "youyifong",
      "count": 2,
      "uuid": 29523631
    }
  ],
  "_userbio": {
    "uuid": 29523631,
    "type": "user",
    "name": "Youyi Fong"
  },
  "_downloads": {
    "count": 193,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/copcor"
  },
  "_searchresults": 17,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/copcor.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "youyifong",
  "_cranurl": false,
  "_releases": [
    {
      "version": "2023.8-27",
      "date": "2023-08-30"
    },
    {
      "version": "2024.7-31",
      "date": "2024-07-31"
    }
  ],
  "_exports": [
    "cove.boost.collapse.strata",
    "draw.x.axis.cor",
    "get.xlim",
    "marker.name.to.assay",
    "pcr",
    "pcr2",
    "predictCompetingRisk",
    "predictCompetingRisk2"
  ],
  "_help": [
    {
      "page": "copcor",
      "title": "copcor",
      "topics": [
        "copcor"
      ]
    },
    {
      "page": "cove.boost.collapse.strata",
      "title": "Collapse sample strata for COVE boost correlates study",
      "topics": [
        "cove.boost.collapse.strata"
      ]
    },
    {
      "page": "plotting",
      "title": "Plotting Helper Functions",
      "topics": [
        "draw.x.axis.cor",
        "get.xlim"
      ]
    },
    {
      "page": "predictCompetingRisk2",
      "title": "Cumulative Incidence Function (CIF) Under Competing Risk",
      "topics": [
        "pcr",
        "pcr2",
        "predictCompetingRisk",
        "predictCompetingRisk2"
      ]
    },
    {
      "page": "utils",
      "title": "Utility Functions",
      "topics": [
        "marker.name.to.assay"
      ]
    }
  ],
  "_readme": "https://github.com/cran/copcor/raw/HEAD/README.md",
  "_rundeps": [
    "kyotil"
  ],
  "_vignettes": [
    {
      "source": "copcor-vignette.pdf.asis",
      "filename": "copcor-vignette.pdf",
      "title": "Correlates of Protection Correlates of Risk",
      "engine": "R.rsp::asis",
      "headings": [],
      "created": "2023-08-30 16:34:40",
      "modified": "2023-08-30 16:34:40",
      "commits": 1
    }
  ],
  "_score": 2.929418925714293,
  "_indexed": true,
  "_nocasepkg": "copcor",
  "_universes": [
    "youyifong"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2024.7-31",
      "date": "2026-05-16T09:29:19.000Z",
      "distro": "noble",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "61c63da58b493a42e1e4b512db54a6a5fa51057d07320d73591fa84edcd87edd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/25958392288"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2024.7-31",
      "date": "2026-05-16T09:29:18.000Z",
      "distro": "noble",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "f41c7c428acf9c6c38107c87792ae6ed5366d098d78bf345b7db75647a7763e7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/25958392288"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2024.7-31",
      "date": "2026-05-16T09:30:40.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "094252c6e3fa9e194c84590c98bf8c8ad3da3df053a6a502abd4df1c5fda999a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/25958392288"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2024.7-31",
      "date": "2026-05-16T09:30:34.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "8370c09d255ca583a51f4c06f3de23b5b638352a0ff13b4ad1cb300b6bbe01eb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/25958392288"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2024.7-31",
      "date": "2026-05-16T09:28:43.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "09565058c3bca1a43363953a2ec27107d9831a3fc534a137ed3c214d4280666b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/25958392288"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2024.7-31",
      "date": "2026-05-16T09:29:02.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "268ee755ac5c31a0aaad3959b968bf108439d9add92a4fc85570f021d2205367",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/25958392288"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2024.7-31",
      "date": "2026-05-16T09:28:49.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "e884a4e44f04ff515c8f3ad964e7b89143119046e13304cb647a1e6404e2a8a7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/25958392288"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2024.7-31",
      "date": "2026-06-02T18:03:12.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "758089659ac05ee6d77c343cc912d4b639d76a969442f950ddd91f9214962897",
      "status": "success",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/25958392288"
    }
  ]
}