{
  "_id": "6a2faaa33efcd9bda4327015",
  "Package": "copcor",
  "LazyLoad": "yes",
  "Version": "2024.7-31",
  "Title": "Correlates of Protection and Correlates of Risk Functions",
  "Authors@R": "c(person(\"Youyi\", \"Fong\", role = \"cre\", email = \"youyifong@gmail.com\"), person(\"Yiwen\", \"He\", role = \"aut\", email = \"ylu2@scharp.org\"), person(\"Chenchen\", \"Yu\", role = \"aut\", email = \"cyu@scharp.org\"), person(\"Bhavesh\", \"Borate\", role = \"aut\", email = \"bborate@scharp.org\"), person(\"Peter\", \"Gilbert\", role = \"aut\", email = \"pgilbert@fredhutch.org\"))",
  "Description": "Correlates of protection (CoP) and correlates of risk\n(CoR) study the immune biomarkers associated with an infectious\ndisease outcome, e.g. COVID or HIV-1 infection. This package\ncontains shared functions for analyzing CoP and CoR, including\nbootstrapping procedures, competing risk estimation, and\nbootstrapping marginalized risks.",
  "VignetteBuilder": "R.rsp",
  "License": "GPL (>= 2)",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-15 07:30:21 UTC",
    "User": "root"
  },
  "Author": "Youyi Fong [cre], Yiwen He [aut], Chenchen Yu [aut], Bhavesh\nBorate [aut], Peter Gilbert [aut]",
  "Maintainer": "Youyi Fong <youyifong@gmail.com>",
  "Repository": "https://youyifong.r-universe.dev",
  "Date/Publication": "2024-08-01 02:49:50 UTC",
  "RemoteUrl": "https://github.com/cran/copcor",
  "RemoteRef": "HEAD",
  "RemoteSha": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
  "MD5sum": "8ff6ca4cdb24c70b248ed01289722fb7",
  "_user": "youyifong",
  "_type": "src",
  "_file": "copcor_2024.7-31.tar.gz",
  "_fileid": "aec0152df144a41447f6afb7ac2ec183d1bdaf18c0b1742a79c7e9ff6f454616",
  "_filesize": 120149,
  "_sha256": "aec0152df144a41447f6afb7ac2ec183d1bdaf18c0b1742a79c7e9ff6f454616",
  "_created": "2026-06-15T07:30:21.000Z",
  "_published": "2026-06-15T07:32:51.232Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 81368622914,
      "time": 108,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7631635944"
    },
    {
      "job": 81368622923,
      "time": 105,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7631637045"
    },
    {
      "job": 81368622916,
      "time": 97,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7631632283"
    },
    {
      "job": 81368623027,
      "time": 100,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7631633415"
    },
    {
      "job": 81368198935,
      "time": 158,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7631599604"
    },
    {
      "job": 81368623113,
      "time": 91,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7631632812"
    },
    {
      "job": 81368622935,
      "time": 83,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7631628014"
    },
    {
      "job": 81368622926,
      "time": 59,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7631620908"
    },
    {
      "job": 81368622929,
      "time": 66,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7631622456"
    }
  ],
  "_buildurl": "https://github.com/r-universe/youyifong/actions/runs/27530794166",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/copcor",
  "_commit": {
    "id": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
    "author": "Youyi Fong <youyifong@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2024.7-31\n",
    "time": 1722480590
  },
  "_maintainer": {
    "name": "Youyi Fong",
    "email": "youyifong@gmail.com",
    "login": "youyifong",
    "description": "",
    "uuid": 29523631
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6",
      "role": "Depends"
    },
    {
      "package": "kyotil",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "R.rsp",
      "role": "Suggests"
    },
    {
      "package": "survival",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "youyifong",
      "count": 2,
      "uuid": 29523631
    }
  ],
  "_userbio": {
    "uuid": 29523631,
    "type": "user",
    "name": "Youyi Fong",
    "followers": 5
  },
  "_downloads": {
    "count": 195,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/copcor"
  },
  "_searchresults": 17,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/copcor.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "youyifong",
  "_cranurl": false,
  "_releases": [
    {
      "version": "2023.8-27",
      "date": "2023-08-30"
    },
    {
      "version": "2024.7-31",
      "date": "2024-07-31"
    }
  ],
  "_exports": [
    "cove.boost.collapse.strata",
    "draw.x.axis.cor",
    "get.xlim",
    "marker.name.to.assay",
    "pcr",
    "pcr2",
    "predictCompetingRisk",
    "predictCompetingRisk2"
  ],
  "_help": [
    {
      "page": "copcor",
      "title": "copcor",
      "topics": [
        "copcor"
      ]
    },
    {
      "page": "cove.boost.collapse.strata",
      "title": "Collapse sample strata for COVE boost correlates study",
      "topics": [
        "cove.boost.collapse.strata"
      ]
    },
    {
      "page": "plotting",
      "title": "Plotting Helper Functions",
      "topics": [
        "draw.x.axis.cor",
        "get.xlim"
      ]
    },
    {
      "page": "predictCompetingRisk2",
      "title": "Cumulative Incidence Function (CIF) Under Competing Risk",
      "topics": [
        "pcr",
        "pcr2",
        "predictCompetingRisk",
        "predictCompetingRisk2"
      ]
    },
    {
      "page": "utils",
      "title": "Utility Functions",
      "topics": [
        "marker.name.to.assay"
      ]
    }
  ],
  "_readme": "https://github.com/cran/copcor/raw/HEAD/README.md",
  "_rundeps": [
    "kyotil"
  ],
  "_vignettes": [
    {
      "source": "copcor-vignette.pdf.asis",
      "filename": "copcor-vignette.pdf",
      "title": "Correlates of Protection Correlates of Risk",
      "engine": "R.rsp::asis",
      "headings": [
        "Correlates of Protection and Correlates of Risk"
      ],
      "created": "2023-08-30 16:34:40",
      "modified": "2023-08-30 16:34:40",
      "commits": 1
    }
  ],
  "_score": 2.929418925714293,
  "_indexed": true,
  "_nocasepkg": "copcor",
  "_universes": [
    "youyifong"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2024.7-31",
      "date": "2026-06-15T07:32:12.000Z",
      "distro": "noble",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "c6cec73d7a1e15917483cec1f4778f23d55bc414f2eaa235af059976ddd527d8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27530794166"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2024.7-31",
      "date": "2026-06-15T07:32:15.000Z",
      "distro": "noble",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "55a9a6e96ece1fe3a4ab6759262d8a0cfe6c1ce5d7ea5ff3d44f4d2c40b42eb3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27530794166"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2024.7-31",
      "date": "2026-06-15T07:32:00.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "111670eda51172fae87ce188d306b42abb83123656ca1abfda8446f130c3d13c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27530794166"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2024.7-31",
      "date": "2026-06-15T07:32:04.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "02f2c80f34305c97f1948f78210e6edf39c0e7548975a2860ee7cfa14b0fbd16",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27530794166"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2024.7-31",
      "date": "2026-06-15T07:32:16.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "ffc71f20c4231860b3d962dc00ea77f6f7b1e3b271a600509bfd5afeebe1d7d2",
      "status": "success",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27530794166"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2024.7-31",
      "date": "2026-06-15T07:31:42.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "bc08981cc2065e05aec863c53bf2ce22c47db6ffc966bcca398156aa0c74d356",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27530794166"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2024.7-31",
      "date": "2026-06-15T07:31:24.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "3a49856f48b26d172e222b3ad86efc862fcfbe69d09586714021f578e5ca9248",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27530794166"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2024.7-31",
      "date": "2026-06-15T07:31:26.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "e6536e86b4f1ea6a79ad4bd40b598129a0eaf8f72cc44699d7d6e0fc8b81616f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27530794166"
    }
  ]
}