{
  "_id": "6a57182dff0138dec5d6da4f",
  "Package": "copcor",
  "LazyLoad": "yes",
  "Version": "2024.7-31",
  "Title": "Correlates of Protection and Correlates of Risk Functions",
  "Authors@R": "c(person(\"Youyi\", \"Fong\", role = \"cre\", email = \"youyifong@gmail.com\"), person(\"Yiwen\", \"He\", role = \"aut\", email = \"ylu2@scharp.org\"), person(\"Chenchen\", \"Yu\", role = \"aut\", email = \"cyu@scharp.org\"), person(\"Bhavesh\", \"Borate\", role = \"aut\", email = \"bborate@scharp.org\"), person(\"Peter\", \"Gilbert\", role = \"aut\", email = \"pgilbert@fredhutch.org\"))",
  "Description": "Correlates of protection (CoP) and correlates of risk\n(CoR) study the immune biomarkers associated with an infectious\ndisease outcome, e.g. COVID or HIV-1 infection. This package\ncontains shared functions for analyzing CoP and CoR, including\nbootstrapping procedures, competing risk estimation, and\nbootstrapping marginalized risks.",
  "VignetteBuilder": "R.rsp",
  "License": "GPL (>= 2)",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-15 05:16:12 UTC",
    "User": "root"
  },
  "Author": "Youyi Fong [cre], Yiwen He [aut], Chenchen Yu [aut], Bhavesh\nBorate [aut], Peter Gilbert [aut]",
  "Maintainer": "Youyi Fong <youyifong@gmail.com>",
  "Repository": "https://youyifong.r-universe.dev",
  "Date/Publication": "2024-08-01 02:49:50 UTC",
  "RemoteUrl": "https://github.com/cran/copcor",
  "RemoteRef": "HEAD",
  "RemoteSha": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
  "_user": "youyifong",
  "_type": "src",
  "_file": "copcor_2024.7-31.tar.gz",
  "_fileid": "https://r2.ropensci.org/789f13f18106cd3400ca6c3a0bf63c25ec2080ff6bd1b421d72ca56affab02c8",
  "_filesize": 120148,
  "_sha256": "789f13f18106cd3400ca6c3a0bf63c25ec2080ff6bd1b421d72ca56affab02c8",
  "_expires": "2026-10-23T05:18:35.000Z",
  "_created": "2026-07-15T05:16:12.000Z",
  "_published": "2026-07-15T05:18:37.005Z",
  "_jobs": [
    {
      "job": 87274379952,
      "time": 98,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8333268003"
    },
    {
      "job": 87274379980,
      "time": 112,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8333271454"
    },
    {
      "job": 87274380015,
      "time": 73,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8333261137"
    },
    {
      "job": 87274379974,
      "time": 66,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8333259338"
    },
    {
      "job": 87274006368,
      "time": 171,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8333240209"
    },
    {
      "job": 87274379966,
      "time": 94,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8333266656"
    },
    {
      "job": 87274379978,
      "time": 74,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8333261391"
    },
    {
      "job": 87274379971,
      "time": 69,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8333260157"
    },
    {
      "job": 87274380011,
      "time": 77,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8333262012"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/youyifong/actions/runs/29390893753",
  "_status": "success",
  "_upstream": "https://github.com/cran/copcor",
  "_commit": {
    "id": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
    "author": "Youyi Fong <youyifong@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2024.7-31\n",
    "time": 1722480590
  },
  "_maintainer": {
    "name": "Youyi Fong",
    "email": "youyifong@gmail.com",
    "login": "youyifong",
    "description": "",
    "uuid": 29523631
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6",
      "role": "Depends"
    },
    {
      "package": "kyotil",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "R.rsp",
      "role": "Suggests"
    },
    {
      "package": "survival",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "youyifong",
      "count": 2,
      "uuid": 29523631
    }
  ],
  "_userbio": {
    "uuid": 29523631,
    "type": "user",
    "name": "Youyi Fong",
    "followers": 5
  },
  "_downloads": {
    "count": 238,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/copcor"
  },
  "_searchresults": 17,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/copcor.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "youyifong",
  "_cranurl": false,
  "_releases": [
    {
      "version": "2023.8-27",
      "date": "2023-08-30"
    },
    {
      "version": "2024.7-31",
      "date": "2024-07-31"
    }
  ],
  "_exports": [
    "cove.boost.collapse.strata",
    "draw.x.axis.cor",
    "get.xlim",
    "marker.name.to.assay",
    "pcr",
    "pcr2",
    "predictCompetingRisk",
    "predictCompetingRisk2"
  ],
  "_help": [
    {
      "page": "copcor",
      "title": "copcor",
      "topics": [
        "copcor"
      ]
    },
    {
      "page": "cove.boost.collapse.strata",
      "title": "Collapse sample strata for COVE boost correlates study",
      "topics": [
        "cove.boost.collapse.strata"
      ]
    },
    {
      "page": "plotting",
      "title": "Plotting Helper Functions",
      "topics": [
        "draw.x.axis.cor",
        "get.xlim"
      ]
    },
    {
      "page": "predictCompetingRisk2",
      "title": "Cumulative Incidence Function (CIF) Under Competing Risk",
      "topics": [
        "pcr",
        "pcr2",
        "predictCompetingRisk",
        "predictCompetingRisk2"
      ]
    },
    {
      "page": "utils",
      "title": "Utility Functions",
      "topics": [
        "marker.name.to.assay"
      ]
    }
  ],
  "_readme": "https://github.com/cran/copcor/raw/HEAD/README.md",
  "_rundeps": [
    "kyotil"
  ],
  "_vignettes": [
    {
      "source": "copcor-vignette.pdf.asis",
      "filename": "copcor-vignette.pdf",
      "title": "Correlates of Protection Correlates of Risk",
      "engine": "R.rsp::asis",
      "headings": [
        "Correlates of Protection and Correlates of Risk"
      ],
      "created": "2023-08-30 16:34:40",
      "modified": "2023-08-30 16:34:40",
      "commits": 1
    }
  ],
  "_score": 2.929418925714293,
  "_indexed": true,
  "_nocasepkg": "copcor",
  "_universes": [
    "youyifong"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2024.7-31",
      "date": "2026-07-15T05:17:53.000Z",
      "distro": "resolute",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "https://r2.ropensci.org/e68e770c3992adf6bdf5b78d5d5a10d74d38a9f926ffabdf083315b6caab29d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/29390893753"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2024.7-31",
      "date": "2026-07-15T05:18:04.000Z",
      "distro": "resolute",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "https://r2.ropensci.org/189b875b430f60c0ade126c3f0147c5e2b5592e0e7964ca370335a825f10df46",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/29390893753"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2024.7-31",
      "date": "2026-07-15T05:17:31.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "https://r2.ropensci.org/11645f560b629085e45ea709a1a892e31f3a4909ad4a0415eddcdaa2cfa1dc33",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/29390893753"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2024.7-31",
      "date": "2026-07-15T05:17:24.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "https://r2.ropensci.org/282de1d88266b553b789a0712b05ebb2dddee2fe15885c635914cf14d44e93a3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/29390893753"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2024.7-31",
      "date": "2026-07-15T05:18:00.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "https://r2.ropensci.org/8fba26f8fb6d1d1c76970ad7e35c7b5d9ec7e1c5f2e3fa21b8a8df5341733d94",
      "status": "success",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/29390893753"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2024.7-31",
      "date": "2026-07-15T05:17:22.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "https://r2.ropensci.org/982006e853230aa1a732598a917edcacf440fbff879b11f3bb992b08339fdeed",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/29390893753"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2024.7-31",
      "date": "2026-07-15T05:17:19.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "https://r2.ropensci.org/cc1fbaa72587456e4b39daf9ad75e1ecf69dc7f17cf24bd806fa87021ea60b67",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/29390893753"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2024.7-31",
      "date": "2026-07-15T05:17:25.000Z",
      "commit": "79ffb81f9aeb85b72912146a5acc22ec3381e2f6",
      "fileid": "https://r2.ropensci.org/a74854daa8f0bdd68503cff7183194040a7c5e4a10077f249fc33cd94e575589",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/29390893753"
    }
  ]
}