{
  "_id": "6a292909732311cd875a11cf",
  "Package": "FSDAM",
  "LazyLoad": "yes",
  "LazyData": "yes",
  "Version": "2024.7-30",
  "Title": "Forward Stepwise Deep Autoencoder-Based Monotone NLDR",
  "Authors@R": "c(person(\"Youyi\", \"Fong\", role = \"cre\", email = \"youyifong@gmail.com\"), person(\"Jun\", \"Xu\", role = \"aut\", email = \"junxu8@gmail.com\"))",
  "Maintainer": "Youyi Fong <youyifong@gmail.com>",
  "VignetteBuilder": "R.rsp",
  "Description": "FS-DAM performs feature extraction through latent\nvariables identification. Implementation is based on\nautoencoders with monotonicity and orthogonality constraints.",
  "License": "GPL (>= 2)",
  "NeedsCompilation": "no",
  "Config/pak/sysreqs": "libpng-dev python3",
  "Repository": "https://youyifong.r-universe.dev",
  "Date/Publication": "2025-07-23 19:40:17 UTC",
  "RemoteUrl": "https://github.com/youyifong/fsdam",
  "RemoteRef": "HEAD",
  "RemoteSha": "16ef6dddbbf43690dc907f55663a9ee17b102824",
  "Packaged": {
    "Date": "2026-06-10 08:26:10 UTC",
    "User": "root"
  },
  "Author": "Youyi Fong [cre],\nJun Xu [aut]",
  "MD5sum": "f6a790a29d5633150dfe012123a62098",
  "_user": "youyifong",
  "_type": "src",
  "_file": "FSDAM_2024.7-30.tar.gz",
  "_fileid": "037c8dfb47af24078ee2726ca5d9685fbcc49a6c188278176eb6b1d28357b329",
  "_filesize": 57227,
  "_sha256": "037c8dfb47af24078ee2726ca5d9685fbcc49a6c188278176eb6b1d28357b329",
  "_created": "2026-06-10T08:26:10.000Z",
  "_published": "2026-06-10T09:06:17.136Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80514476977,
      "time": 135,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7530435919"
    },
    {
      "job": 80514477024,
      "time": 160,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7530445052"
    },
    {
      "job": 80514477137,
      "time": 88,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7531262952"
    },
    {
      "job": 80514477134,
      "time": 143,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7531170755"
    },
    {
      "job": 80513974761,
      "time": 165,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7530383691"
    },
    {
      "job": 80514476995,
      "time": 168,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7530448772"
    },
    {
      "job": 80514476983,
      "time": 88,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7530418180"
    },
    {
      "job": 80514477066,
      "time": 100,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7530423933"
    },
    {
      "job": 80514477084,
      "time": 97,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7530423088"
    }
  ],
  "_buildurl": "https://github.com/r-universe/youyifong/actions/runs/27263245256",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/youyifong/fsdam",
  "_commit": {
    "id": "16ef6dddbbf43690dc907f55663a9ee17b102824",
    "author": "Youyi Fong <youyifong@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md",
    "time": 1753299617
  },
  "_maintainer": {
    "name": "Youyi Fong",
    "email": "youyifong@gmail.com",
    "login": "youyifong",
    "description": "",
    "uuid": 29523631
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "kyotil",
      "role": "Imports"
    },
    {
      "package": "reticulate",
      "version": ">= 1.10",
      "role": "Imports"
    },
    {
      "package": "R.rsp",
      "role": "Suggests"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    }
  ],
  "_owner": "youyifong",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 5
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "youyifong",
      "count": 6,
      "uuid": 29523631
    }
  ],
  "_userbio": {
    "uuid": 29523631,
    "type": "user",
    "name": "Youyi Fong"
  },
  "_downloads": {
    "count": 238,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/FSDAM"
  },
  "_devurl": "https://github.com/youyifong/fsdam",
  "_searchresults": 5,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/FSDAM.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/youyifong/fsdam",
  "_realowner": "youyifong",
  "_cranurl": true,
  "_releases": [
    {
      "version": "2020.11-18",
      "date": "2020-11-20"
    },
    {
      "version": "2024.1-30",
      "date": "2024-01-29"
    },
    {
      "version": "2024.7-30",
      "date": "2024-07-31"
    }
  ],
  "_exports": [
    "fsdam",
    "plot.fsdam"
  ],
  "_datasets": [
    {
      "name": "cc.505",
      "title": "Select Biomarkers from the HVTN 505 Correlates Analysis",
      "object": "cc.505",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ptid",
        "trt",
        "case",
        "control",
        "perprot",
        "last_uninfec_immun_vst",
        "racefull",
        "racefulltxt",
        "bmi",
        "bmicat",
        "bmicattxt",
        "earliest_pos_vst",
        "level",
        "matchlevel",
        "samplingfraction",
        "vst9subcohort",
        "HIVwk28preunbl",
        "age",
        "racecc",
        "bhvrisk",
        "BMI",
        "stratuminds_vaccs",
        "stratuminds",
        "cd4.env.poly",
        "cd8.env.poly",
        "mfounders",
        "wei"
      ],
      "rows": 189,
      "table": true,
      "tojson": true
    },
    {
      "name": "hvtn505tier1",
      "title": "HVTN 505 Immune Correlates Tier 1 Dataset",
      "object": "hvtn505tier1",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ptid",
        "CD8_ANYVRCENV_PolyfunctionalityScore_score",
        "IgGw28_env_mdw",
        "R2aConSgp140CFI",
        "ADCP1",
        "IgG3w28_env_mdw",
        "IgGw28_gp41_mdw",
        "IgGw28_V1V2_mdw",
        "IgAw28_env_mdw"
      ],
      "rows": 150,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "cc.505",
      "title": "Select Biomarkers from the HVTN 505 Correlates Analysis",
      "topics": [
        "cc.505"
      ]
    },
    {
      "page": "fsdam",
      "title": "FS-DAM NLDR",
      "topics": [
        "FSDAM",
        "fsdam",
        "plot.fsdam"
      ]
    },
    {
      "page": "hvtn505tier1",
      "title": "HVTN 505 Immune Correlates Tier 1 Dataset",
      "topics": [
        "hvtn505tier1"
      ]
    }
  ],
  "_readme": "https://github.com/youyifong/fsdam/raw/HEAD/README.md",
  "_rundeps": [
    "here",
    "jsonlite",
    "kyotil",
    "lattice",
    "Matrix",
    "png",
    "rappdirs",
    "Rcpp",
    "RcppTOML",
    "reticulate",
    "rlang",
    "rprojroot",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "FSDAM-vignette.pdf.asis",
      "filename": "FSDAM-vignette.pdf",
      "title": "Forward Stepwise Deep Autoencoder-based Montone Nonlinear Dimensionality Reduction",
      "engine": "R.rsp::asis",
      "headings": [
        "Forward stepwise deep autoencoder-based monotone nonlinear dimensionality reduction"
      ],
      "created": "2025-07-23 17:26:47",
      "modified": "2025-07-23 17:26:47",
      "commits": 1
    }
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "fsdam",
  "_universes": [
    "youyifong"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2024.7-30",
      "date": "2026-06-10T08:28:26.000Z",
      "distro": "noble",
      "commit": "16ef6dddbbf43690dc907f55663a9ee17b102824",
      "fileid": "017b596c416b3180c40abbb4a1cfbb1e15b930346355cff8c30cd503e55dc9dc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27263245256"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2024.7-30",
      "date": "2026-06-10T08:28:53.000Z",
      "distro": "noble",
      "commit": "16ef6dddbbf43690dc907f55663a9ee17b102824",
      "fileid": "ae9beec44ffe996631517fb886a22c0b0f4d9cf1155f89b474864c24a3e62da9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27263245256"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2024.7-30",
      "date": "2026-06-10T09:05:41.000Z",
      "commit": "16ef6dddbbf43690dc907f55663a9ee17b102824",
      "fileid": "b7c527957f496c1ce1cf1bcbcd0b3188e640d046e12842a07614778e9eb2fe5c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27263245256"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2024.7-30",
      "date": "2026-06-10T09:01:25.000Z",
      "commit": "16ef6dddbbf43690dc907f55663a9ee17b102824",
      "fileid": "f2babcbe76c00066720df225bd1a26a9b55aaa46b2c66ed42bbbb6436fe1990f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27263245256"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2024.7-30",
      "date": "2026-06-10T08:29:28.000Z",
      "commit": "16ef6dddbbf43690dc907f55663a9ee17b102824",
      "fileid": "184b8dc4d24ecc36c7b44d4252671fdce6ee8a98c5a4709cf51664cccedb704f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27263245256"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2024.7-30",
      "date": "2026-06-10T08:27:35.000Z",
      "commit": "16ef6dddbbf43690dc907f55663a9ee17b102824",
      "fileid": "8169111e303fe060d2322507724646807923aa6fcf304c51a3365127d26a49b7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27263245256"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2024.7-30",
      "date": "2026-06-10T08:27:50.000Z",
      "commit": "16ef6dddbbf43690dc907f55663a9ee17b102824",
      "fileid": "28a6314ad85f67f2f36fe3cbfab38edbbb318a92a89b98779aeeeaf55e207b4f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27263245256"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2024.7-30",
      "date": "2026-06-10T08:27:53.000Z",
      "commit": "16ef6dddbbf43690dc907f55663a9ee17b102824",
      "fileid": "8fc1bc8c8a3d14195489c6f671b5c72a2e72f6d6215226b65122dfc4430cd398",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/youyifong/actions/runs/27263245256"
    }
  ]
}